Description

orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8522]

Location
Gene

This transcript is a product of gene ENSG00000165588

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
OTX2-001ENST000003394753001297 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9728F1T0D1 G3V3P9 P32243
NM_001270525
NM_021728
NP_001257454
NP_068374
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
OTX2-002ENST000005550061279289 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41960F1T0D0 G3V3J3 P32243
NM_001270523
NM_001270524
NP_001257452
NP_001257453
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
OTX2-007ENST000004089901082289 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41960F1T0D0 G3V3J3 P32243
NM_172337
NP_758840
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
OTX2-006ENST00000554845908239 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V3P9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

OTX2-005ENST0000055478883535 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F1T0C9 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
OTX2-003ENST00000555804797163 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V3J3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

OTX2-004ENST0000055455971535 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F1T0C9 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 5 Coding exons: 3 Transcript length: 3,001 bps Translation length: 297 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS9728

Uniprot

This transcript corresponds to the following Uniprot identifiers: P32243

Transcript Support Level

1

Ensembl version

ENST00000339475.7

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays