Description

APC membrane recruitment protein 2 [Source:HGNC Symbol;Acc:HGNC:26360]

Synonyms

FAM123A, FLJ25477

Location
About this transcript

This transcript has 1 exon, is annotated with 10 domains and features, is associated with 332 variations and maps to 36 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
AMER2-001ENST0000035781610055552aaENSP00000350469
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9312Q8N7J2 NM_199138
NP_954589
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

AMER2-002ENST000005153843197671aaENSP00000426528
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53859Q8N7J2 NM_152704
NP_689917
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 1 Coding exons: 1 Transcript length: 3,197 bps Translation length: 671 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS53859

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N7J2

Transcript Support Level (TSL)

TSL:NA

Ensembl version

ENST00000515384.1

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays