Transcript: ENST00000518699.4 NKX6-3-201

Description

NK6 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:26328]

Gene Synonyms

FLJ25169

Location

Chromosome 8: 41,645,177-41,650,817 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 3203 variant alleles and maps to 273 oligo probes.

Gene

This transcript is a product of gene ENSG00000165066.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000518699.4	NKX6-3-201	2395	265aa	ENSP00000428361.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94289	A6NJ46-1	NM_001364841.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000524115.2	NKX6-3-202	1683	135aa	ENSP00000429553.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6118	A6NJ46-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,395 bps, Translation length: 265 residues

MANE

This MANE Select transcript contains ENSP00000428361 and matches to NM_001364841.2 and NP_001351770.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NJ46

CCDS

This transcript is a member of the Human CCDS set: CCDS94289

Transcript Support Level (TSL)

TSL:5

Version

ENST00000518699.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

not organism-supported

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000518699.4 NKX6-3-201

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Transcript: ENST00000518699.4 NKX6-3-201

Summary

About Us

Get help

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