Description

frataxin [Source:HGNC Symbol;Acc:HGNC:3951]

Synonyms

CyaY, FA, FARR, FRDA, X25

Location
About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 107 variations and maps to 9 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
FXN-001ENST000003772702608210aaENSP00000366482
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6626Q16595 NM_000144
NP_000135
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
FXN-201ENST00000396364980171aaENSP00000379650
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55313Q16595 NM_001161706
NP_001155178
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FXN-004ENST00000396366922196aaENSP00000379652
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43834Q16595 NM_181425
NP_852090
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FXN-003ENST00000498653856135aaENSP00000418015
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JAX1 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
FXN-005ENST00000484259359108aaENSP00000419243
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C585 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 922 bps Translation length: 196 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS43834

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16595

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENST00000396366.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays