Description

ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:12461]

Synonyms

UBAP

Location
About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 165 variations and maps to 32 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
UBAP1-001ENST000002976612735502aaENSP00000297661
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6550Q9NZ09 NM_001171203
NM_001171204
NM_016525
NP_001164674
NP_001164675
NP_057609
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

UBAP1-002ENST000003595442535502aaENSP00000352541
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6550Q9NZ09 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

UBAP1-003ENST000003791862524441aaENSP00000368484
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NZ09 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UBAP1-005ENST000006255212029566aaENSP00000486574
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001171201
NP_001164672
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UBAP1-004ENST000006262621753528aaENSP00000487222
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001171202
NP_001164673
CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Statistics

Exons: 7 Coding exons: 6 Transcript length: 2,535 bps Translation length: 502 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS6550

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZ09

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000359544.2

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays