Description

T, brachyury homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:11515]

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 173 variations and maps to 25 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
T-001ENST000002969462436435aaENSP00000296946
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5290O15178 NM_003181
NP_003172
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

T-002ENST000003668712250377aaENSP00000355836
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59045O15178 NM_001270484
NP_001257413
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
T-003ENST000003668761497404aaENSP00000355841
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3KP65 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

T-004ENST00000461348902243aaENSP00000453512
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YM91 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 8 Coding exons: 7 Transcript length: 2,250 bps Translation length: 377 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS59045

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15178

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000366871.6

Type

Novel protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays