Transcript: ENST00000525899.6 GJB7-203

Description

gap junction protein beta 7 [Source:HGNC Symbol;Acc:HGNC:16690]

Gene Synonyms

BA136M9.1, CX25

Location

Chromosome 6: 87,282,980-87,329,278 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 18 domains and features, is associated with 19880 variant alleles and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSG00000164411.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000525899.6	GJB7-203	2279	223aa	ENSP00000435355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5008	Q6PEY0	NM_198568.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000369576.2	GJB7-201	571	162aa	ENSP00000358589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A0MRM5	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442973.2	GJB7-202	674	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 2,279 bps, Translation length: 223 residues

MANE

This MANE Select transcript contains ENSP00000435355 and matches to NM_198568.3 and NP_940970.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PEY0

CCDS

This transcript is a member of the Human CCDS set: CCDS5008

Transcript Support Level (TSL)

TSL:1

Version

ENST00000525899.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000525899.6 GJB7-203

Summary

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Transcript: ENST00000525899.6 GJB7-203

Summary

About Us

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