Transcript: ENST00000635252.1 PRDM9-203

Description

PR/SET domain 9 [Source:HGNC Symbol;Acc:HGNC:13994]

Gene Synonyms

KMT8B, MEISETZ, MSBP3, PFM6, ZNF899

Location

Chromosome 5: 23,443,586-23,526,498 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 38629 variant alleles and maps to 401 oligo probes.

Gene

This transcript is a product of gene ENSG00000164256.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000296682.4	PRDM9-201	3193	894aa	ENSP00000296682.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43307	Q9NQV7	NM_020227.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000502755.6	PRDM9-202	2942	894aa	ENSP00000425471.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43307	D6RD68 Q9NQV7	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000635252.1	PRDM9-203	1537	411aa	ENSP00000489227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RQY2	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 1,537 bps, Translation length: 411 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000635252.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000635252.1 PRDM9-203

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Transcript: ENST00000635252.1 PRDM9-203

Summary

About Us

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