Description

solute carrier family 45, member 2 [Source:HGNC Symbol;Acc:HGNC:16472]

Synonyms

AIM-1, MATP, OCA4

Location
About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 324 variations and maps to 29 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SLC45A2-002ENST000003821022723460aaENSP00000371534
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43308Q9UMX9 NM_001012509
NP_001012527
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC45A2-001ENST000002965891772530aaENSP00000296589
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3901A0A076YIB8 Q9UMX9 NM_016180
NP_057264
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SLC45A2-003ENST000005093811040243aaENSP00000421100
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75232D6RGY6 NM_001297417
NP_001284346
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC45A2-005ENST00000510600740246aaENSP00000424010
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBP8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC45A2-004ENST00000505056739No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 7 Coding exons: 7 Transcript length: 1,772 bps Translation length: 530 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS3901

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UMX9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000296589.7

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays