Description

sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]

Synonyms

A170, OSIL, p60, p62, p62B, PDB3

Gene

This transcript is a product of gene ENSG00000161011

This gene has 15 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SQSTM1-001ENST000003898052986 bp440 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34317C9JRJ8 E9PFW8 Q13501
NM_003900
NP_003891
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SQSTM1-002ENST000003607182253 bp356 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47355C9JRJ8 E9PFW8 Q13501
NM_001142298
NM_001142299
NP_001135770
NP_001135771
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SQSTM1-013ENST000005101871714 bp378 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JRJ8 E7EMC7 E9PFW8
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SQSTM1-015ENST00000514093842 bp167 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JRJ8 E9PFW8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SQSTM1-003ENST00000422245628 bp140 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JRJ8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SQSTM1-017ENST00000504627602 bp190 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E3W990 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SQSTM1-016ENST00000508284578 bp69 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RBF1 -
SQSTM1-008ENST00000453046572 bp73 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-C9J6J8 D6RBF1 -
SQSTM1-010ENST000005066902405 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SQSTM1-011ENST000005122341722 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SQSTM1-014ENST00000506042921 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SQSTM1-004ENST00000481335562 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SQSTM1-005ENST00000464493532 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SQSTM1-007ENST00000466342808 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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SQSTM1-006ENST00000485412656 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 8 Coding exons: 8 Transcript length: 2,986 bps Translation length: 440 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34317

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13501

Ensembl version

ENST00000389805.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays