Description

chemokine (C-C motif) receptor 5 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:1606]

Synonyms

CC-CKR-5, CD195, CKR-5, CKR5, CMKBR5, IDDM22

Location
About this transcript

This transcript has 1 exon, is annotated with 42 domains and features, is associated with 225 variations and maps to 11 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CCR5-001ENST000002923033450352aaENSP00000292303
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2739P51681 Q38L21 NM_000579
NM_001100168
NP_000570
NP_001093638
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CCR5-003ENST000004457721292352aaENSP00000404881
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2739P51681 Q38L21 -TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 1 Coding exons: 1 Transcript length: 1,292 bps Translation length: 352 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2739

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51681

Transcript Support Level (TSL)

TSL:NA

Ensembl version

ENST00000445772.1

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays