Description

chemokine (C-C motif) receptor 5 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:1606]

Synonyms

CC-CKR-5, CD195, CKR-5, CKR5, CMKBR5, IDDM22

Location
About this transcript

This transcript has 2 exons, is annotated with 42 domains and features, is associated with 225 variations and maps to 28 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CCR5-001ENST000002923033450352aaENSP00000292303
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2739P51681 Q38L21 NM_000579
NM_001100168
NP_000570
NP_001093638
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CCR5-003ENST000004457721292352aaENSP00000404881
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2739P51681 Q38L21 -TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 2 Coding exons: 1 Transcript length: 3,450 bps Translation length: 352 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2739

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51681

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000292303.4

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays