Description

retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:HGNC:10295]

Synonyms

COD1, CORDX1, CRD, RP15, RP3

Location
Gene

This transcript is a product of gene ENSG00000156313

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
RPGR-009ENST000003785054767 bp1152 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35229Q92834 NM_001034853
NP_001030025
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RPGR-001ENST000003188423108 bp815 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14246Q92834 NM_000328
NP_000319
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RPGR-201ENST000003393633686 bp1020 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q92834 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RPGR-006ENST00000464437428 bp129 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
RPGR-004ENST00000494707426 bp143 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
RPGR-002ENST000004828552819 bp646 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q92834 -
RPGR-007ENST000004745842268 bp480 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q92834 -
RPGR-003ENST000004765591047 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
RPGR-008ENST00000494841653 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
RPGR-005ENST00000470183382 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 3 Coding exons: 3 Transcript length: 428 bps Translation length: 129 residues

Ensembl version

ENST00000464437.1

Type

Putative protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs4827349, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-LWK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays