Transcript: ENST00000399899.2 CLDN8-201

Description

claudin 8 [Source:HGNC Symbol;Acc:HGNC:2050]

Location

Chromosome 21: 30,214,006-30,216,097 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 18 domains and features, is associated with 1191 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSG00000156284.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000399899.2	CLDN8-201	2092	225aa	ENSP00000382783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13587	A0A0K0K1I9 P56748	NM_199328.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 2,092 bps, Translation length: 225 residues

MANE

This MANE Select transcript contains ENSP00000382783 and matches to NM_199328.3 and NP_955360.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P56748

CCDS

This transcript is a member of the Human CCDS set: CCDS13587

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000399899.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000399899.2 CLDN8-201

Summary

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Transcript: ENST00000399899.2 CLDN8-201

Summary

About Us

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