Description

solute carrier family 28 (concentrative nucleoside transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11001]

Synonyms

CNT1

Location
About this transcript

This transcript has 18 exons, is annotated with 22 domains and features, is associated with 378 variations and maps to 13 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SLC28A1-201ENST000003945732769649aaENSP00000378074
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10334O00337 NM_004213
NP_004204
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SLC28A1-001ENST000002867492636649aaENSP00000286749
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10334O00337 NM_001287762
NP_001274691
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SLC28A1-202ENST000005381772155483aaENSP00000443752
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73777B7Z3L6 NM_001287761
NP_001274690
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC28A1-002ENST000003386021360175aaENSP00000341629
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10335O00337 NM_201651
NP_964014
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 18 Coding exons: 17 Transcript length: 2,636 bps Translation length: 649 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10334

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00337

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000286749.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays