Description

leucine-rich repeat kinase 1 [Source:HGNC Symbol;Acc:HGNC:18608]

Synonyms

FLJ23119, KIAA1790, RIPK6, Roco1

Gene

This transcript is a product of gene ENSG00000154237

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
LRRK1-003ENST000003889487671 bp2015 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42086B3KSX5 E9PK39 E9PLF8
E9PMK9 Q38SD2
NM_024652
NP_078928
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRRK1-004ENST000005320291241 bp264 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PLF8 Q38SD2 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRRK1-007ENST00000534045569 bp32 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PLF8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
LRRK1-005ENST0000052645711632 bp660 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
LRRK1-001ENST000005252846494 bp689 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PK39 E9PLF8 E9PMK9
-
LRRK1-002ENST000005312706015 bp650 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PK39 E9PLF8 -
LRRK1-006ENST000005321452790 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
LRRK1-010ENST00000525395737 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
LRRK1-008ENST00000527698679 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
LRRK1-009ENST00000525617614 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
LRRK1-011ENST00000538064493 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 34 Coding exons: 33 Transcript length: 7,671 bps Translation length: 2,015 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS42086

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q38SD2

Ensembl version

ENST00000388948.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays