Description

SET binding protein 1 [Source:HGNC Symbol;Acc:HGNC:15573]

Synonyms

KIAA0437, SEB

Location
About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 682 variations and maps to 51 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SETBP1-001ENST0000028203098991596aaENSP00000282030
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11923Q9Y6X0 NM_015559
NP_056374
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SETBP1-002ENST000004268381785242aaENSP00000390687
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45859Q9Y6X0 NM_001130110
NP_001123582
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SETBP1-003ENST00000591940762137aaENSP00000468506
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7ES17 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 6 Coding exons: 5 Transcript length: 9,899 bps Translation length: 1,596 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS11923

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y6X0

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000282030.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays