Transcript: ENST00000373631.8 CRB2-202

Description

crumbs cell polarity complex component 2 [Source:HGNC Symbol;Acc:HGNC:18688]

Gene Synonyms

FLJ16786, FLJ38464

Location

Chromosome 9: 123,356,197-123,378,753 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 152 domains and features, is associated with 13266 variant alleles and maps to 468 oligo probes.

Gene

This transcript is a product of gene ENSG00000148204.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000373631.8	CRB2-202	5613	1285aa	ENSP00000362734.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6852	Q5IJ48-1	NM_173689.7	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000359999.7	CRB2-201	3659	1176aa	ENSP00000353092.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5IJ48-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000460253.1	CRB2-203	3947	953aa	ENSP00000435279.1	Nonsense mediated decay		Q5IJ48-3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 5,613 bps, Translation length: 1,285 residues

MANE

This MANE Select transcript contains ENSP00000362734 and matches to NM_173689.7 and NP_775960.4

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5IJ48

CCDS

This transcript is a member of the Human CCDS set: CCDS6852

Transcript Support Level (TSL)

TSL:1

Version

ENST00000373631.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000373631.8 CRB2-202

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Transcript: ENST00000373631.8 CRB2-202

Summary

About Us

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