Transcript: ENST00000359999.7 CRB2-201

Description

crumbs cell polarity complex component 2 [Source:HGNC Symbol;Acc:HGNC:18688]

Gene Synonyms

FLJ16786, FLJ38464

Location

Chromosome 9: 123,356,170-123,374,099 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 141 domains and features, is associated with 10698 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSG00000148204.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000373631.8	CRB2-202	5613	1285aa	ENSP00000362734.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6852	Q5IJ48-1	NM_173689.7	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000359999.7	CRB2-201	3659	1176aa	ENSP00000353092.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5IJ48-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000460253.1	CRB2-203	3947	953aa	ENSP00000435279.1	Nonsense mediated decay		Q5IJ48-3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,659 bps, Translation length: 1,176 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5IJ48

Transcript Support Level (TSL)

TSL:2

Version

ENST00000359999.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000359999.7 CRB2-201

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Transcript: ENST00000359999.7 CRB2-201

Summary

About Us

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