Description

R-spondin 2 [Source:HGNC Symbol;Acc:HGNC:28583]

Synonyms

MGC35555

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 115 variations and maps to 12 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
RSPO2-001ENST000002766593111243aaENSP00000276659
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6307Q6UXX9 NM_178565
NP_848660
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
RSPO2-002ENST000005177812748179aaENSP00000427937
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS64953Q6UXX9 NM_001282863
NP_001269792
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RSPO2-003ENST000005179392487176aaENSP00000428940
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6UXX9 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RSPO2-008ENST00000521502674168aaENSP00000428614
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RHC3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RSPO2-006ENST0000052002660289aaENSP00000429159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RJA2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RSPO2-007ENST0000052175757989aaENSP00000430485
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RJU7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RSPO2-004ENST0000052233356877aaENSP00000430973
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RGU9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RSPO2-005ENST00000521956562121aaENSP00000430010
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RH25 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 5 Transcript length: 3,111 bps Translation length: 243 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS6307

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6UXX9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000276659.8

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays