Transcript: ENST00000590447.1 SLC16A2-202

Description

solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]

Gene Synonyms

AHDS, DXS128, DXS128E, MCT7, MCT8, MRX22, XPCT

Location

Chromosome X: 74,521,120-74,532,608 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 3288 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSG00000147100.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000587091.6	SLC16A2-201	4128	539aa	ENSP00000465734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14426	P36021	NM_006517.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000590447.1	SLC16A2-202	1886	229aa	ENSP00000466213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELT4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000636771.1	SLC16A2-203	3893	69aa	ENSP00000490445.1	Nonsense mediated decay		A0A1B0GVB4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,886 bps, Translation length: 229 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000590447.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000590447.1 SLC16A2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000590447.1 SLC16A2-202

Summary

About Us

Get help

Our sister sites

Follow us