Transcript: ENST00000503643.1 CISD2-202

Description

CDGSH iron sulfur domain 2 [Source:HGNC Symbol;Acc:HGNC:24212]

Gene Synonyms

ERIS, MINER1, NAF-1, WFS2, ZCD2

Location

Chromosome 4: 102,869,336-102,887,756 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 7336 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSG00000145354.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000273986.10	CISD2-201	5878	135aa	ENSP00000273986.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34040	Q8N5K1	NM_001008388.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000503643.1	CISD2-202	808	145aa	ENSP00000423716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCF4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000643561.1	CISD2-204	1738	50aa	ENSP00000494068.1	Nonsense mediated decay		A0A2R8Y4Y3	-	-
ENST00000646632.1	CISD2-205	852	40aa	ENSP00000494257.1	Nonsense mediated decay		A0A2R8Y540	-	-
ENST00000574446.1	CISD2-203	471	47aa	ENSP00000458976.1	Nonsense mediated decay		I3L1N9	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 808 bps, Translation length: 145 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000503643.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000503643.1 CISD2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000503643.1 CISD2-202

Summary

About Us

Get help

Our sister sites

Follow us