Transcript: ENST00000389661.4 ABCA12-202

Description

ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637]

Gene Synonyms

DKFZP434G232, ICR2B, LI2

Location

Chromosome 2: 214,932,622-215,032,086 reverse strand.

About this transcript

This transcript has 45 exons, is annotated with 33 domains and features, is associated with 41841 variant alleles and maps to 905 oligo probes.

Gene

This transcript is a product of gene ENSG00000144452.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000272895.12	ABCA12-201	9298	2595aa	ENSP00000272895.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33372	Q86UK0-1	NM_173076.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000389661.4	ABCA12-202	7005	2277aa	ENSP00000374312.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33373	Q86UK0-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000412081.1	ABCA12-203	485	90aa	ENSP00000400231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBK1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 45, Coding exons: 45, Transcript length: 7,005 bps, Translation length: 2,277 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86UK0

CCDS

This transcript is a member of the Human CCDS set: CCDS33373

Transcript Support Level (TSL)

TSL:1

Version

ENST00000389661.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000389661.4 ABCA12-202

Summary

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Transcript: ENST00000389661.4 ABCA12-202

Summary

About Us

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