Description

tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]

Synonyms

LFS1, p53

Location
Gene

This transcript is a product of gene ENSG00000141510

This gene has 27 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
TP53-202ENST000006171852724341 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45606A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7EMR6
E7ESS1 E9PCY9 G4Y083
L0EQ05 L0ES54 Q0PKT5
Q1HGV1 Q6IT77 Q761V2
S5LQU8
NM_001126114
NP_001119586
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-005ENST000004202462653341 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45606A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7EMR6
E7ESS1 E9PCY9 G4Y083
L0EQ05 L0ES54 P04637
Q0PKT5 Q1HGV1 Q6IT77
Q761V2 S5LQU8
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-025ENST000006226452653302 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73971A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 Q761V2
S5LQU8
NM_001276696
NP_001263625
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-022ENST000006102922639354 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73969A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
H2EHT1 L0EQ05 Q1HGV1
Q761V2 S5LQU8
NM_001126118
NP_001119590
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-004ENST000004552632580346 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45605A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7EMR6
E7ESS1 E9PCY9 G4Y083
L0EQ05 L0ES54 P04637
Q0PKT5 Q1HGV1 Q6IT77
Q761V2 S5LQU8
NM_001126113
NP_001119585
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-027ENST000006105382580307 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73970A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 Q761V2
S5LQU8
NM_001276695
NP_001263624
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-001ENST000002693052579393 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11118A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B4DNI2 B5AKF6
E7EMR6 E7ESS1 E9PCY9
G4Y083 H2EHT1 K7PPA8
L0EQ05 L0ES54 P04637
Q0PKT5 Q1HGV1 Q6IT77
Q761V2 S5LQU8
NM_000546
NM_001126112
NP_000537
NP_001119584
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TP53-021ENST000006207392579354 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73969A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
H2EHT1 L0EQ05 Q1HGV1
Q761V2 S5LQU8
NM_001276760
NM_001276761
NP_001263689
NP_001263690
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-002ENST000004458882506393 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11118A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B4DNI2 B5AKF6
E7EMR6 E7ESS1 E9PCY9
G4Y083 H2EHT1 K7PPA8
L0EQ05 L0ES54 P04637
Q0PKT5 Q1HGV1 Q6IT77
Q761V2 S5LQU8
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TP53-028ENST000006194852506354 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73969A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
H2EHT1 L0EQ05 Q1HGV1
Q761V2 S5LQU8
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-007ENST000005103852404209 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73968A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 S5LQU8
NM_001126116
NP_001119588
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-024ENST000006189442404182 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73965A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 L0EQ05
Q1HGV1 S5LQU8
NM_001276698
NP_001263627
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-006ENST000005042902331214 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73967A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 S5LQU8
NM_001126117
NP_001119589
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-026ENST000006106232331187 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73964A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 L0EQ05
Q1HGV1 S5LQU8
NM_001276699
NP_001263628
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-008ENST000005049372271261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73966A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 S5LQU8
NM_001126115
NP_001119587
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-023ENST000006191862271234 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73963A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 L0EQ05
Q1HGV1 S5LQU8
NM_001276697
NP_001263626
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-019ENST000003595971152343 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7EMR6
E7ESS1 E9PCY9 G4Y083
J3KP33 L0EQ05 L0ES54
Q0PKT5 Q1HGV1 Q6IT77
Q761V2 S5LQU8
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-201ENST000006159101149382 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7ESS1
L0EQ05 Q0PKT5 Q1HGV1
Q6IT77 Q761V2 S5LQU8
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-018ENST000004134651018285 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2I9Z0 A4GWB5 A4GWB8
A4GWD0 B5AKF6 E7EMR6
E7EQX7 E9PCY9 G4Y083
L0ES54 Q0PKT5 Q1HGV1
Q6IT77 Q761V2
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TP53-015ENST00000509690729199 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2I9Z0 A2I9Z1 A4GW67
A4GW74 A4GW75 A4GW76
A4GW97 B5AKF6 E7ESS1
L0EQ05 Q1HGV1 S5LQU8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-014ENST00000508793634165 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EMR6 E9PCY9 G4Y083
L0ES54 Q0PKT5 Q6IT77
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-020ENST00000604348568143 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G4Y083 L0ES54 Q0PKT5
Q6IT77 S4R334
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-003ENST00000503591565128 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PCY9 G4Y083 L0ES54
Q0PKT5 Q6IT77
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-013ENST00000514944546155 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4GWB5 A4GWB8 A4GWD0
E9PFT5 Q1HGV1 Q761V2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-017ENST0000057602417531 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-016ENST00000574684104No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TP53-009ENST000005050141261No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 4 Transcript length: 568 bps Translation length: 143 residues

Transcript Support Level

4

Ensembl version

ENST00000604348.3

Type

Novel protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays