Description

GATA binding protein 6 [Source:HGNC Symbol;Acc:HGNC:4174]

Location
About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 107 variations and maps to 2 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GATA6-001ENST000002692163770595aaENSP00000269216
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11872Q92908 NM_005257
NP_005248
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GATA6-002ENST000005816942057595aaENSP00000462313
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11872Q92908 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Statistics

Exons: 6 Coding exons: 6 Transcript length: 2,057 bps Translation length: 595 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS11872

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92908

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000581694.1

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays