Description

prickle homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17019]

Synonyms

EPM1B, FLJ31937

Location
Gene

This transcript is a product of gene ENSG00000139174

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
PRICKLE1-001ENST000003451275811831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_153026
NP_694571
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PRICKLE1-201ENST000004556974253831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_001144882
NM_001144883
NP_001138354
NP_001138355
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PRICKLE1-005ENST000004457664080831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PRICKLE1-003ENST000005486963584831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PRICKLE1-004ENST000005522403324831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_001144881
NP_001138353
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PRICKLE1-007ENST00000551050693119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W1J1 F8W1Q8 Q687H3
Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-006ENST00000552108585159 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VUG8 F8W1J1 F8W1Q8
Q687H3 Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-002ENST00000547113456110 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W1Q8 Q687H3 Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-008ENST00000552200453No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 8 Coding exons: 7 Transcript length: 3,324 bps Translation length: 831 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8742

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MT3

Transcript Support Level

2

Ensembl version

ENST00000552240.3

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays