Description

PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]

Synonyms

PFM2

Gene

This transcript is a product of gene ENSG00000138738

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
PRDM5-001ENST000002648085330 bp630 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3716Q9NQX1 NM_018699
NP_061169
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-002ENST000003944352492 bp111 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-006ENST000004282092338 bp599 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-005ENST000005151092259 bp501 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-009ENST000005024091044 bp145 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
PRDM5-011ENST00000506065696 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-007ENST00000505033576 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-012ENST00000513741210 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-004ENST000005054842396 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-003ENST000005128451249 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-010ENST00000503661847 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-008ENST00000507611535 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 9 Coding exons: 5 Transcript length: 1,044 bps Translation length: 145 residues

Ensembl version

ENST00000502409.1

Type

Known nonsense mediated decay

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays