Description

PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]

Synonyms

PFM2

Gene

This transcript is a product of gene ENSG00000138738

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
PRDM5-001ENST000002648085330 bp630 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3716Q9NQX1 NM_018699
NP_061169
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-002ENST000003944352492 bp111 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-006ENST000004282092338 bp599 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-005ENST000005151092259 bp501 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQX1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PRDM5-009ENST000005024091044 bp145 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
PRDM5-011ENST00000506065696 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-007ENST00000505033576 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-012ENST00000513741210 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PRDM5-004ENST000005054842396 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-003ENST000005128451249 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-010ENST00000503661847 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PRDM5-008ENST00000507611535 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 14 Coding exons: 13 Transcript length: 2,259 bps Translation length: 501 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQX1

Ensembl version

ENST00000515109.2

Type

Putative protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays