Description

egl-9 family hypoxia-inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]

Synonyms

C1orf12, HIFPH2, PHD2, SM-20, ZMYND6

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 90 variations and maps to 29 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
EGLN1-001ENST000003666417097426aaENSP00000355601
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1595Q9GZT9 R4SCQ0 NM_022051
NP_071334
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
EGLN1-002ENST00000476717829No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 7,097 bps Translation length: 426 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1595

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZT9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000366641.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays