Description

protein tyrosine phosphatase, non-receptor type 22 (lymphoid) [Source:HGNC Symbol;Acc:HGNC:9652]

Synonyms

Lyp, Lyp1, Lyp2, PTPN8

Gene

This transcript is a product of gene ENSG00000134242

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
PTPN22-001ENST000003597853654 bp807 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS863F5H2S8 NM_001193431
NM_015967
NP_001180360
NP_057051
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-004ENST000005284143424 bp752 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS864Q9Y2R2 NM_012411
NP_036543
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-201ENST000005382533575 bp783 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H2S8 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-006ENST000004203772726 bp795 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PMT0 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-007ENST000005257992118 bp668 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-002ENST000004606201794 bp179 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9Y2R2 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTPN22-008ENST000005322242421 bp135 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PM87 -
PTPN22-010ENST00000529045527 bp92 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PMK2 -
PTPN22-009ENST00000534519565 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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PTPN22-003ENST000004841472258 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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PTPN22-005ENST00000469077562 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 19 Coding exons: 19 Transcript length: 3,424 bps Translation length: 752 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS864

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2R2

Ensembl version

ENST00000528414.2

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays