Human (GRCh38.p14)
Description

PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]

Gene Synonyms

LIP.1, LIPRIN

Location
About this transcript

This transcript has 28 exons, is annotated with 48 domains and features, is associated with 51021 variant alleles and maps to 1095 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000253925.12PPFIA1-20152401202aaENSP00000253925.7
 
Protein coding
CCDS31627Q13136-1 NM_003626.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000644155.1PPFIA1-22659961224aaENSP00000496327.1
 
Protein coding
A0A2R8Y7R9 -CDS 5' incomplete
ENST00000389547.7PPFIA1-20241331185aaENSP00000374198.3
 
Protein coding
CCDS31628Q13136-2 -GENCODE basicTSL:1
ENST00000528853.2PPFIA1-2121362253aaENSP00000434692.2
 
Protein coding
H0YDZ8 -TSL:3CDS 5' incomplete
ENST00000528750.1PPFIA1-2111168389aaENSP00000434445.1
 
Protein coding
H0YDW2 -TSL:5CDS 5' and 3' incomplete
ENST00000638133.1PPFIA1-225814271aaENSP00000490647.1
 
Protein coding
A0A1B0GVT3 -TSL:3CDS 5' and 3' incomplete
ENST00000530798.5PPFIA1-217710237aaENSP00000433114.1
 
Protein coding
H0YD72 -TSL:5CDS 5' and 3' incomplete
ENST00000530746.1PPFIA1-216575158aaENSP00000432722.1
 
Protein coding
E9PPF6 -TSL:3CDS 3' incomplete
ENST00000532024.1PPFIA1-22056399aaENSP00000432065.1
 
Protein coding
E9PID5 -TSL:3CDS 3' incomplete
ENST00000648755.1PPFIA1-2276705166aaENSP00000497908.1
 
Nonsense mediated decay
A0A3B3ITS2 --
ENST00000532504.5PPFIA1-2225159583aaENSP00000433619.1
 
Nonsense mediated decay
E9PJZ7 -TSL:1
ENST00000526262.5PPFIA1-2064537387aaENSP00000435752.1
 
Nonsense mediated decay
H0YEF9 -TSL:1CDS 5' incomplete
ENST00000530390.5PPFIA1-21487946aaENSP00000435978.1
 
Nonsense mediated decay
H0YEK0 -TSL:5CDS 5' incomplete
ENST00000526369.3PPFIA1-20856497aaENSP00000437024.1
 
Nonsense mediated decay
H0YF15 -TSL:4CDS 5' incomplete
ENST00000533894.5PPFIA1-22455333aaENSP00000432913.1
 
Nonsense mediated decay
H0YD39 -TSL:4CDS 5' incomplete
ENST00000530548.5PPFIA1-2153774No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000530294.5PPFIA1-213977No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000526347.5PPFIA1-207862No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000532443.1PPFIA1-221587No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000526074.5PPFIA1-205573No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000528284.1PPFIA1-210568No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000530932.1PPFIA1-218536No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000525922.2PPFIA1-204358No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000531657.1PPFIA1-2193036No protein-
 
Retained intron
--TSL:2
ENST00000527612.1PPFIA1-209598No protein-
 
Retained intron
--TSL:3
ENST00000532793.1PPFIA1-223550No protein-
 
Retained intron
--TSL:3
ENST00000525530.1PPFIA1-203514No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 28, Coding exons: 26, Transcript length: 5,240 bps, Translation length: 1,202 residues

MANE

This MANE Select transcript contains ENSP00000253925 and matches to NM_003626.5 and NP_003617.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13136

CCDS

This transcript is a member of the Human CCDS set: CCDS31627

Transcript Support Level (TSL)

TSL:1

Version

ENST00000253925.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.