Transcript: ENST00000351817.5 NKX2-4-201

Description

NK2 homeobox 4 [Source:HGNC Symbol;Acc:HGNC:7837]

Gene Synonyms

NKX2.4, NKX2D

Location

Chromosome 20: 21,395,365-21,397,526 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 22 domains and features, is associated with 1673 variant alleles and maps to 206 oligo probes.

Gene

This transcript is a product of gene ENSG00000125816.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000351817.5	NKX2-4-201	1738	354aa	ENSP00000345147.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42855	Q9H2Z4	NM_033176.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,738 bps, Translation length: 354 residues

MANE

This MANE Select transcript contains ENSP00000345147 and matches to NM_033176.2 and NP_149416.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H2Z4

CCDS

This transcript is a member of the Human CCDS set: CCDS42855

Transcript Support Level (TSL)

TSL:5

Version

ENST00000351817.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000351817.5 NKX2-4-201

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Transcript: ENST00000351817.5 NKX2-4-201

Summary

About Us

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