Description

coagulation factor XIII, A1 polypeptide [Source:HGNC Symbol;Acc:HGNC:3531]

Synonyms

F13A

Location
About this transcript

This transcript has 15 exons, is annotated with 9 domains and features, is associated with 431 variations and maps to 12 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
F13A1-001ENST000002648703999732aaENSP00000264870
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4496P00488 NM_000129
NP_000120
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
F13A1-006ENST00000451619631147aaENSP00000411114
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y796 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

F13A1-004ENST00000431222592186aaENSP00000416295
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6PVK5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

F13A1-003ENST00000414279582138aaENSP00000413334
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NQP5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

F13A1-002ENST00000445223454102aaENSP00000394693
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y4W5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

F13A1-005ENST00000479211579No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 15 Coding exons: 14 Transcript length: 3,999 bps Translation length: 732 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4496

Uniprot

This transcript corresponds to the following Uniprot identifiers: P00488

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000264870.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays