Description

gap junction protein, beta 6, 30kDa [Source:HGNC Symbol;Acc:HGNC:4288]

Synonyms

CX30, DFNA3, ED2, EDH, HED

Location
About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 130 variations and maps to 20 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GJB6-004ENST000003561922131261aaENSP00000348521
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9291A0A024RDS4 O95452 NM_001110219
NP_001103689
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

GJB6-003ENST000004000661927261aaENSP00000382939
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9291A0A024RDS4 O95452 NM_001110220
NP_001103690
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

GJB6-001ENST000002411241808261aaENSP00000241124
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9291A0A024RDS4 O95452 NM_006783
NP_006774
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

GJB6-002ENST000004000651805261aaENSP00000382938
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9291A0A024RDS4 O95452 NM_001110221
NP_001103691
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 3 Coding exons: 1 Transcript length: 1,805 bps Translation length: 261 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS9291

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95452

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000400065.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays