Description

TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]

Synonyms

ALS10, TDP-43

Location
Gene

This transcript is a product of gene ENSG00000120948

This gene has 27 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
TARDBP-001ENST000002401855367 bp414 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS122K7EJM5 Q13148 NM_007375
NP_031401
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-003ENST000003150911835 bp295 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1AKP7 K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-012ENST000006217901008 bp304 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-019ENST00000617172980 bp212 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-005ENST00000476201929 bp276 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EN94 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-013ENST00000616545920 bp301 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-016ENST00000621715816 bp243 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-017ENST00000622057706 bp200 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-004ENST00000473118701 bp201 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-022ENST00000610369563 bp127 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-002ENST000004738691946 bp298 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-G3V162 K7EJM5 -
TARDBP-011ENST000004390801388 bp84 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---
TARDBP-006ENST000004724761001 bp80 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-K7EJ99 -
TARDBP-025ENST00000621573992 bp35 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-020ENST00000611963739 bp175 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-021ENST00000620632706 bp149 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-008ENST00000496840692 bp16 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-018ENST00000619555682 bp138 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-024ENST00000620505657 bp115 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-023ENST00000614494515 bp78 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-007ENST00000477447409 bp65 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-026ENST00000611008929 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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TARDBP-009ENST00000480464790 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-014ENST00000613864584 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-028ENST00000617757434 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-027ENST00000613177379 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-015ENST00000618606584 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 5 Coding exons: 3 Transcript length: 409 bps Translation length: 65 residues

Ensembl version

ENST00000477447.3

Type

Known nonsense mediated decay

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
Annotation Attributes

dotter confirmed [Definitions]

Transcript-based displays