Description

TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]

Synonyms

ALS10, TDP-43

Location
About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 160 variations and maps to 102 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TARDBP-001ENST000002401855367414aaENSP00000240185
 
Protein coding
CCDS122A0A024R4E2 Q13148 NM_007375
NP_031401
TSL:1GENCODE basicAPPRIS P1
TARDBP-003ENST000003150911835295aaENSP00000313129
 
Protein coding
-B1AKP7 -TSL:5GENCODE basic
TARDBP-201ENST000006297251031298aaENSP00000486989
 
Protein coding
---TSL:5GENCODE basic
TARDBP-012ENST000006217901008304aaENSP00000482191
 
Protein coding
-A0A087WYY0 -TSL:5GENCODE basic
TARDBP-019ENST00000617172980212aaENSP00000479219
 
Protein coding
-A0A087WV68 -CDS 5' incompleteTSL:5
TARDBP-005ENST00000476201929276aaENSP00000466842
 
Protein coding
-K7EN94 -CDS 3' incompleteTSL:5
TARDBP-013ENST00000616545920301aaENSP00000484722
 
Protein coding
-A0A087X260 -TSL:5GENCODE basic
TARDBP-016ENST00000621715816243aaENSP00000480690
 
Protein coding
-A0A087WX29 -CDS 3' incompleteTSL:3
TARDBP-017ENST00000622057706200aaENSP00000481206
 
Protein coding
-A0A087WXQ5 -CDS 5' incompleteTSL:5
TARDBP-004ENST00000473118701201aaENSP00000465240
 
Protein coding
-K7EJM5 -CDS 3' incompleteTSL:3
TARDBP-022ENST00000610369563127aaENSP00000482559
 
Protein coding
-A0A087WZC9 -CDS 5' incompleteTSL:5
TARDBP-002ENST000004738691946298aaENSP00000432132
 
Nonsense mediated decay
-G3V162 -TSL:5
TARDBP-011ENST00000439080138884aaENSP00000404666
 
Nonsense mediated decay
-A0A0A0MSV7 -TSL:2
TARDBP-006ENST00000472476100180aaENSP00000465080
 
Nonsense mediated decay
-K7EJ99 -TSL:5
TARDBP-025ENST0000062157399235aaENSP00000477852
 
Nonsense mediated decay
-A0A087WTG4 -CDS 5' incompleteTSL:3
TARDBP-020ENST00000611963739175aaENSP00000481330
 
Nonsense mediated decay
-A0A087WXV3 -CDS 5' incompleteTSL:5
TARDBP-021ENST00000620632706149aaENSP00000480771
 
Nonsense mediated decay
-A0A087WX67 -CDS 5' incompleteTSL:3
TARDBP-008ENST0000049684069216aaENSP00000467020
 
Nonsense mediated decay
-K7ENM9 -CDS 5' incompleteTSL:3
TARDBP-018ENST00000619555682138aaENSP00000479978
 
Nonsense mediated decay
-A0A087WW61 -CDS 5' incompleteTSL:5
TARDBP-024ENST00000620505657115aaENSP00000479758
 
Nonsense mediated decay
-A0A087WVX6 -CDS 5' incompleteTSL:5
TARDBP-023ENST0000061449451578aaENSP00000482754
 
Nonsense mediated decay
-A0A087WZM1 -CDS 5' incompleteTSL:5
TARDBP-007ENST0000047744740965aaENSP00000465888
 
Nonsense mediated decay
-K7EL26 -CDS 5' incompleteTSL:5
TARDBP-026ENST00000611008929No protein-
 
Processed transcript
---TSL:5
TARDBP-009ENST00000480464790No protein-
 
Processed transcript
---TSL:2
TARDBP-014ENST00000613864584No protein-
 
Processed transcript
---TSL:4
TARDBP-028ENST00000617757434No protein-
 
Processed transcript
---TSL:3
TARDBP-027ENST00000613177379No protein-
 
Processed transcript
---TSL:3
TARDBP-015ENST00000618606584No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 6 Coding exons: 5 Transcript length: 5,367 bps Translation length: 414 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS122

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13148

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000240185.7

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays