Description

TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]

Synonyms

ALS10, TDP-43

Location
Gene

This transcript is a product of gene ENSG00000120948

This gene has 27 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
TARDBP-001ENST000002401855367 bp414 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS122K7EJM5 Q13148 NM_007375
NP_031401
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-003ENST000003150911835 bp295 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1AKP7 K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-012ENST000006217901008 bp304 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-019ENST00000617172980 bp212 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-005ENST00000476201929 bp276 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EN94 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-013ENST00000616545920 bp301 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TARDBP-016ENST00000621715816 bp243 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-017ENST00000622057706 bp200 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-004ENST00000473118701 bp201 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJM5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
TARDBP-022ENST00000610369563 bp127 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-002ENST000004738691946 bp298 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-G3V162 K7EJM5 -
TARDBP-011ENST000004390801388 bp84 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---
TARDBP-006ENST000004724761001 bp80 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-K7EJ99 -
TARDBP-025ENST00000621573992 bp35 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-020ENST00000611963739 bp175 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-021ENST00000620632706 bp149 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-008ENST00000496840692 bp16 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-018ENST00000619555682 bp138 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-024ENST00000620505657 bp115 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-023ENST00000614494515 bp78 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-007ENST00000477447409 bp65 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
TARDBP-026ENST00000611008929 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-009ENST00000480464790 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-014ENST00000613864584 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-028ENST00000617757434 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-027ENST00000613177379 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
TARDBP-015ENST00000618606584 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 6 Coding exons: 5 Transcript length: 5,367 bps Translation length: 414 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS122

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13148

Ensembl version

ENST00000240185.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays