Description

msh homeobox 2 [Source:HGNC Symbol;Acc:HGNC:7392]

Synonyms

CRS2, FPP, HOX8, MSH, PFM, PFM1

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 82 variations and maps to 19 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
MSX2-001ENST000002392432241267aaENSP00000239243
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4392P35548 NM_002449
NP_002440
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
MSX2-002ENST000005077851188134aaENSP00000427425
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RIS4 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 2 Coding exons: 2 Transcript length: 2,241 bps Translation length: 267 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4392

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35548

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000239243.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays