Description

msh homeobox 2 [Source:HGNC Symbol;Acc:HGNC:7392]

Synonyms

CRS2, FPP, HOX8, MSH, PFM, PFM1

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 94 variations and maps to 33 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
MSX2-001ENST000002392432241267aaENSP00000239243
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4392P35548 NM_002449
NP_002440
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

MSX2-002ENST000005077851188134aaENSP00000427425
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RIS4 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 2 Coding exons: 2 Transcript length: 2,241 bps Translation length: 267 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4392

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35548

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000239243.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays