Description

pleiomorphic adenoma gene-like 1 [Source:HGNC Symbol;Acc:HGNC:9046]

Synonyms

LOT1, ZAC

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 135 variations and maps to 45 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PLAGL1-004ENST000003605374430463aaENSP00000353734
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202Q9UM63 NM_001289042
NM_001289044
NP_001275971
NP_001275973
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-003ENST000003547653663463aaENSP00000346810
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202Q9UM63 NM_001080954
NM_001289046
NP_001074423
NP_001275975
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-202ENST000004166233237463aaENSP00000400060
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202Q9UM63 NM_001289047
NP_001275976
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-011ENST000006256223216463aaENSP00000486355
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202-NM_001080952
NM_001080953
NM_001289045
NM_001289048
NM_001289049
NM_006718
NP_001074421
NP_001074422
NP_001275974
NP_001275977
NP_001275978
NP_006709
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-204ENST000004442023197463aaENSP00000400929
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202Q9UM63 NM_001080951
NM_001289043
NP_001074420
NP_001275972
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-001ENST000003675712800463aaENSP00000356543
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5202Q9UM63 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PLAGL1-203ENST000004374122640411aaENSP00000392418
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5203Q9UM63 NM_001080955
NM_001289037
NM_001289038
NM_001289039
NM_001289040
NP_001074424
NP_001275966
NP_001275967
NP_001275968
NP_001275969
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLAGL1-002ENST000003675722496411aaENSP00000356544
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5203Q9UM63 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLAGL1-005ENST000004179591645411aaENSP00000395960
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5203Q9UM63 NM_001080956
NM_001289041
NM_002656
NP_001074425
NP_001275970
NP_002647
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLAGL1-201ENST000003923076296252aaENSP00000376124
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q68DN7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLAGL1-010ENST0000062919572364aaENSP00000486763
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A1YLA1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-018ENST0000062629459380aaENSP00000487447
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-017ENST0000062744958873aaENSP00000485907
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-015ENST0000062646258775aaENSP00000486752
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-016ENST00000628651563102aaENSP00000486632
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-012ENST0000062637333312aaENSP00000486711
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PLAGL1-008ENST00000629890584No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PLAGL1-009ENST00000626022559No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PLAGL1-013ENST00000628069559No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PLAGL1-014ENST00000628630556No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PLAGL1-006ENST00000493898505No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLAGL1-007ENST00000631184491No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
Statistics

Exons: 5 Coding exons: 2 Transcript length: 4,430 bps Translation length: 463 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS5202

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UM63

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000360537.5

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays