Description

apolipoprotein A-I [Source:HGNC Symbol;Acc:HGNC:600]

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 149 variations and maps to 17 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
APOA1-001ENST000002368501227267aaENSP00000236850
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8378A0A024R3E3 P02647 NM_000039
NP_000030
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
APOA1-003ENST000003753231088267aaENSP00000364472
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8378A0A024R3E3 P02647 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
APOA1-002ENST00000375320940267aaENSP00000364469
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8378A0A024R3E3 P02647 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
APOA1-004ENST00000359492932267aaENSP00000352471
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8378A0A024R3E3 P02647 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
APOA1-005ENST00000375329927245aaENSP00000364478
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W696 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 4 Coding exons: 3 Transcript length: 932 bps Translation length: 267 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8378

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02647

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENST00000359492.5

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays