Description

EGF containing fibulin-like extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3218]

Synonyms

DHRD, FBLN3, FBNL, MTLV, S1-5

Location
Gene

This transcript is a product of gene ENSG00000115380

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
EFEMP1-001ENST000003945553024493 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1857C9J4H7 C9J4J8 C9J8S9
C9JPZ9 C9JQX7 C9JUM4
Q12805 Q53TA7 Q580Q6
NM_001039348
NM_001039349
NP_001034437
NP_001034438
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
EFEMP1-003ENST000003554261820493 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1857C9J4H7 C9J4J8 C9J8S9
C9JPZ9 C9JQX7 C9JUM4
Q12805 Q53TA7 Q580Q6
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
EFEMP1-008ENST00000438672733172 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J4J8 C9J8S9
C9JPZ9 C9JQX7 C9JUM4
Q580Q6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-004ENST00000439193572119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J4J8 C9J8S9
C9JPZ9 C9JQX7 C9JUM4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-006ENST00000440439559106 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J4J8 C9J8S9
C9JQX7 C9JUM4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-005ENST0000042990955887 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J8S9 C9JQX7
C9JUM4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-011ENST0000045233755262 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J8S9 C9JUM4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-009ENST0000042166454752 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 C9J8S9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-007ENST0000042420733927 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J4H7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-010ENST00000497698604No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-013ENST00000452161563No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EFEMP1-012ENST00000480016588No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 11 Coding exons: 10 Transcript length: 3,024 bps Translation length: 493 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1857

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12805

Transcript Support Level

1

Ensembl version

ENST00000394555.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays