Human (GRCh38.p14)
Description

collagen type IX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2217]

Location
About this transcript

This transcript has 32 exons, is annotated with 30 domains and features, is associated with 29762 variant alleles and maps to 857 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000357250.11COL9A1-2023697921aaENSP00000349790.6
 
Protein coding
CCDS4971P20849-1 NM_001851.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000320755.12COL9A1-2013051678aaENSP00000315252.7
 
Protein coding
CCDS47447P20849-2 -GENCODE basicTSL:1
ENST00000683980.2COL9A1-2152983688aaENSP00000506990.1
 
Protein coding
CCDS93940A0A804HIB6 -GENCODE basic
ENST00000683758.1COL9A1-2142812632aaENSP00000508147.1
 
Protein coding
A0A804HL06 -GENCODE basic
ENST00000370496.3COL9A1-2041372328aaENSP00000359527.3
 
Protein coding
CCDS93941P20849-3 -GENCODE basicTSL:1
ENST00000644493.1COL9A1-2112548112aaENSP00000495638.1
 
Nonsense mediated decay
A0A2R8YG47 --
ENST00000447041.6COL9A1-20569052aaENSP00000507959.1
 
Nonsense mediated decay
A0A804HKK1 -TSL:4CDS 5' incomplete
ENST00000360859.12COL9A1-2032193No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000489611.5COL9A1-2081940No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000486080.5COL9A1-2071844No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000683602.1COL9A1-2134339No protein-
 
Retained intron
---
ENST00000493682.7COL9A1-2103513No protein-
 
Retained intron
--TSL:5
ENST00000684176.1COL9A1-2162849No protein-
 
Retained intron
---
ENST00000682313.1COL9A1-2122545No protein-
 
Retained intron
---
ENST00000470652.1COL9A1-206531No protein-
 
Retained intron
--TSL:5
ENST00000489861.2COL9A1-209243No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 32, Coding exons: 32, Transcript length: 3,051 bps, Translation length: 678 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20849

CCDS

This transcript is a member of the Human CCDS set: CCDS47447

Transcript Support Level (TSL)

TSL:1

Version

ENST00000320755.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.