Human (GRCh38.p14)
Description

collagen type IX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2217]

Location
About this transcript

This transcript has 13 exons, is associated with 8551 variant alleles and maps to 198 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000357250.11COL9A1-2023697921aaENSP00000349790.6
 
Protein coding
CCDS4971P20849-1 NM_001851.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000320755.12COL9A1-2013051678aaENSP00000315252.7
 
Protein coding
CCDS47447P20849-2 -GENCODE basicTSL:1
ENST00000683980.2COL9A1-2152983688aaENSP00000506990.1
 
Protein coding
CCDS93940A0A804HIB6 -GENCODE basic
ENST00000683758.1COL9A1-2142812632aaENSP00000508147.1
 
Protein coding
A0A804HL06 -GENCODE basic
ENST00000370496.3COL9A1-2041372328aaENSP00000359527.3
 
Protein coding
CCDS93941P20849-3 -GENCODE basicTSL:1
ENST00000644493.1COL9A1-2112548112aaENSP00000495638.1
 
Nonsense mediated decay
A0A2R8YG47 --
ENST00000447041.6COL9A1-20569052aaENSP00000507959.1
 
Nonsense mediated decay
A0A804HKK1 -TSL:4CDS 5' incomplete
ENST00000360859.12COL9A1-2032193No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000489611.5COL9A1-2081940No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000486080.5COL9A1-2071844No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000683602.1COL9A1-2134339No protein-
 
Retained intron
---
ENST00000493682.7COL9A1-2103513No protein-
 
Retained intron
--TSL:5
ENST00000684176.1COL9A1-2162849No protein-
 
Retained intron
---
ENST00000682313.1COL9A1-2122545No protein-
 
Retained intron
---
ENST00000470652.1COL9A1-206531No protein-
 
Retained intron
--TSL:5
ENST00000489861.2COL9A1-209243No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 13, Coding exons: 4, Transcript length: 690 bps, Translation length: 52 residues

Transcript Support Level (TSL)

TSL:4

Incomplete CDS

CDS 5' incomplete

Version

ENST00000447041.6

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.