Human (GRCh38.p14)
Description

SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421]

Location
About this transcript

This transcript has 15 exons, is annotated with 25 domains and features, is associated with 177459 variant alleles and maps to 409 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000683767.1SOX6-2199304828aaENSP00000507545.1
 
Protein coding
CCDS91447P35712-1 NM_001367873.1MANE SelectEnsembl CanonicalGENCODE basicAPPRIS ALT2
ENST00000655819.1SOX6-2188979804aaENSP00000499737.1
 
Protein coding
P35712-2 -GENCODE basicAPPRIS ALT2
ENST00000396356.7SOX6-2028865808aaENSP00000379644.3
 
Protein coding
CCDS7821P35712-3 -GENCODE basicAPPRIS P4TSL:1
ENST00000316399.10SOX6-2018808808aaENSP00000324948.6
 
Protein coding
CCDS7821P35712-3 -GENCODE basicAPPRIS P4TSL:5
ENST00000528252.5SOX6-2102707801aaENSP00000432134.1
 
Protein coding
CCDS53604P35712-4 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000527619.6SOX6-2082699801aaENSP00000434455.2
 
Protein coding
CCDS53604P35712-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000528429.5SOX6-2112656828aaENSP00000433233.1
 
Protein coding
CCDS91447P35712-1 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000533411.5SOX6-215586159aaENSP00000436170.1
 
Protein coding
E9PQL4 -TSL:4CDS 3' incomplete
ENST00000529469.1SOX6-21254979aaENSP00000432596.1
 
Protein coding
E9PQ67 -TSL:4CDS 3' incomplete
ENST00000526673.1SOX6-207534139aaENSP00000434892.1
 
Protein coding
E9PN02 -TSL:3CDS 3' incomplete
ENST00000530378.5SOX6-2131818159aaENSP00000432577.1
 
Nonsense mediated decay
E9PQ78 -TSL:2
ENST00000533658.5SOX6-2161202No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000524520.5SOX6-203709No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000525835.5SOX6-206660No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000527840.1SOX6-209574No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000525259.1SOX6-205574No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000524650.1SOX6-204534No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000531297.1SOX6-214429No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000533870.1SOX6-2177224No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,707 bps, Translation length: 801 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35712

CCDS

This transcript is a member of the Human CCDS set: CCDS53604

Transcript Support Level (TSL)

TSL:2

Version

ENST00000528252.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.