Description

SRY (sex determining region Y)-box 6 [Source:HGNC Symbol;Acc:HGNC:16421]

Synonyms

Location
Gene

This transcript is a product of gene ENSG00000110693

This gene has 17 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SOX6-201ENST000003963568865 bp808 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7821E9PN02 E9PQ67 E9PQL4
P35712
NM_033326
NP_201583
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SOX6-001ENST000003163998808 bp808 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7821E9PN02 E9PQ67 E9PQL4
P35712
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SOX6-002ENST000005282522707 bp801 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53604E9PN02 E9PQ67 E9PQL4
P35712
NM_001145811
NP_001139283
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SOX6-003ENST000005276192699 bp804 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53605E9PN02 E9PQ67 E9PQL4
P35712
NM_017508
NP_059978
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SOX6-012ENST000005284292656 bp828 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PN02 E9PQ67 E9PQL4
P35712
NM_001145819
NP_001139291
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SOX6-009ENST00000533411586 bp159 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PN02 E9PQ67 E9PQL4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SOX6-008ENST00000529469549 bp79 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PQ67 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SOX6-010ENST00000526673534 bp139 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PN02 E9PQ67 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SOX6-011ENST000005303781818 bp159 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PN02 E9PQ67 E9PQ78
-
SOX6-006ENST000005336581202 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-015ENST00000524520709 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-017ENST00000525835660 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-007ENST00000527840574 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-016ENST00000525259574 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-013ENST00000524650534 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-014ENST00000531297429 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SOX6-005ENST000005338707224 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 15 Coding exons: 14 Transcript length: 2,707 bps Translation length: 801 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS53604

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35712

Ensembl version

ENST00000528252.2

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays