Description

tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]

Synonyms

DFNA12, DFNA8, DFNB21

About this transcript

This transcript has 24 exons, is annotated with 43 domains and features, is associated with 891 variations and maps to 11 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TECTA-001ENST0000039279374262155aaENSP00000376543
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8434O75443 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TECTA-201ENST0000026403764682155aaENSP00000264037
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8434O75443 NM_005422
NP_005413
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TECTA-003ENST00000478058832No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 24 Coding exons: 23 Transcript length: 7,426 bps Translation length: 2,155 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8434

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75443

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000392793.4

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays