Description

elongator acetyltransferase complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:1171]

Synonyms

C11orf19, PAXNEB

Location
Gene

This transcript is a product of gene ENSG00000109911

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
ELP4-003ENST000003959341961535 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73272ELP4-003 G5E9D4 Q9H4R8
NM_001288726
NP_001275655
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ELP4-001ENST000003506381784424 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7875ELP4-001 Q96EB1 Q9H4R8
NM_019040
NP_061913
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
ELP4-004ENST000003791631679476 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73271ELP4-004 Q96EB1 Q9H4R8
NM_001288725
NP_001275654
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ELP4-002ENST000004743741161185 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PPJ9 ELP4-002 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 10 Coding exons: 10 Transcript length: 1,784 bps Translation length: 424 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7875

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96EB1

Transcript Support Level

1

Ensembl version

ENST00000350638.7

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays