Description

spastic paraplegia 11 (autosomal recessive) [Source:HGNC Symbol;Acc:11226]

Location
Gene

This transcript is a product of gene ENSG00000104133

This gene has 25 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDSGENCODE basic
SPG11-001ENST000002618667774ENSP000002618662443Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS10112YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-002ENST000005353027288ENSP000004452782330Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS53939YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-004ENST000004275346935ENSP000003961102265Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-006ENST000005583196426ENSP000004535992079Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-003ENST000005591932579ENSP00000453848779Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-007ENST000005595112127ENSP00000453246567Protein codingGenes and/or transcript that contains an open reading frame (ORF).5'--
SPG11-019ENST00000558138750ENSP00000453314250Protein codingGenes and/or transcript that contains an open reading frame (ORF).5' and 3'--
SPG11-023ENST00000558988620ENSP00000453921138Protein codingGenes and/or transcript that contains an open reading frame (ORF).5'--
SPG11-010ENST00000559754411ENSP00000453490107Protein codingGenes and/or transcript that contains an open reading frame (ORF).5'--
SPG11-021ENST00000557866468ENSP00000453227156Non stop decay5'--
SPG11-013ENST00000558155571ENSP00000453238102Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. 5'--
SPG11-016ENST00000559822561ENSP00000452744131Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. 5'--
SPG11-025ENST00000560858447ENSP0000045299199Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. 5'--
SPG11-022ENST00000560435413ENSP0000045262943Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. 5'--
SPG11-014ENST00000558253879No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SPG11-015ENST00000558790858No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SPG11-027ENST00000559347716No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SPG11-008ENST000005589891816No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-026ENST00000558080759No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-012ENST00000561391629No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-024ENST00000558561555No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-018ENST00000561268530No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-011ENST00000558093526No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-017ENST00000559933518No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SPG11-020ENST00000560299437No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
Statistics

Exons: 40 Coding exons: 40 Transcript length: 7,774 bps Translation length: 2,443 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10112

Ensembl version

ENST00000261866.7

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000253927 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays