Description

spastic paraplegia 11 (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:11226]

Synonyms

FLJ21439, KIAA1840

Location
About this transcript

This transcript has 40 exons, is annotated with 11 domains and features, is associated with 917 variations and maps to 79 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SPG11-001ENST0000026186677742443aaENSP00000261866
 
Protein coding
CCDS10112Q96JI7 NM_025137
NP_079413
TSL:1GENCODE basicAPPRIS P3
SPG11-002ENST0000053530272882330aaENSP00000445278
 
Protein coding
CCDS53939Q96JI7 NM_001160227
NP_001153699
TSL:1GENCODE basicAPPRIS ALT2
SPG11-004ENST0000042753469352265aaENSP00000396110
 
Protein coding
-C4B7M2 -TSL:1GENCODE basicAPPRIS ALT2
SPG11-006ENST0000055831964262079aaENSP00000453599
 
Protein coding
-Q96JI7 -TSL:5GENCODE basicAPPRIS ALT2
SPG11-003ENST000005591932579779aaENSP00000453848
 
Protein coding
-H0YN34 -TSL:1GENCODE basicAPPRIS ALT2
SPG11-007ENST000005595112127567aaENSP00000453246
 
Protein coding
-H0YLK7 -CDS 5' incompleteTSL:2APPRIS ALT2
SPG11-019ENST00000558138750250aaENSP00000453314
 
Protein coding
-H0YLR8 -CDS 5' and 3' incompleteTSL:5APPRIS ALT2
SPG11-023ENST00000558988620138aaENSP00000453921
 
Protein coding
-H0YN96 -CDS 5' incompleteTSL:3APPRIS ALT2
SPG11-010ENST00000559754411107aaENSP00000453490
 
Protein coding
-H0YM73 -CDS 5' incompleteTSL:5APPRIS ALT2
SPG11-021ENST00000557866468156aaENSP00000453227
 
Non stop decay
-A0A075B718 -CDS 5' incompleteTSL:2APPRIS ALT2
SPG11-013ENST00000558155571102aaENSP00000453238
 
Nonsense mediated decay
-H0YLK0 -CDS 5' incompleteTSL:5APPRIS ALT2
SPG11-016ENST00000559822561131aaENSP00000452744
 
Nonsense mediated decay
-H0YKC1 -CDS 5' incompleteTSL:5APPRIS ALT2
SPG11-025ENST0000056085844799aaENSP00000452991
 
Nonsense mediated decay
-H0YKY8 -CDS 5' incompleteTSL:5APPRIS ALT2
SPG11-022ENST0000056043541343aaENSP00000452629
 
Nonsense mediated decay
-H0YK24 -CDS 5' incompleteTSL:5APPRIS ALT2
SPG11-014ENST00000558253879No protein-
 
Processed transcript
---TSL:3
SPG11-015ENST00000558790858No protein-
 
Processed transcript
---TSL:3
SPG11-027ENST00000559347716No protein-
 
Processed transcript
---TSL:5
SPG11-008ENST000005589891816No protein-
 
Retained intron
---TSL:3
SPG11-026ENST00000558080759No protein-
 
Retained intron
---TSL:4
SPG11-012ENST00000561391629No protein-
 
Retained intron
---TSL:3
SPG11-024ENST00000558561555No protein-
 
Retained intron
---TSL:3
SPG11-018ENST00000561268530No protein-
 
Retained intron
---TSL:4
SPG11-011ENST00000558093526No protein-
 
Retained intron
---TSL:3
SPG11-017ENST00000559933518No protein-
 
Retained intron
---TSL:2
SPG11-020ENST00000560299437No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 40 Coding exons: 40 Transcript length: 7,774 bps Translation length: 2,443 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10112

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JI7

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000261866.11

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays