Description

spastic paraplegia 11 (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:11226]

Synonyms

FLJ21439, KIAA1840

Location
Gene

This transcript is a product of gene ENSG00000104133

This gene has 25 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SPG11-001ENST000002618667774 bp2443 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10112C4B7M3 H0YN96 Q96JI7
NM_025137
NP_079413
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPG11-002ENST000005353027288 bp2330 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53939C4B7M3 H0YN96 Q96JI7
NM_001160227
NP_001153699
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPG11-004ENST000004275346935 bp2265 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C4B7M2 C4B7M3 H0YN96
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPG11-006ENST000005583196426 bp2079 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C4B7M3 H0YN96 Q96JI7
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPG11-003ENST000005591932579 bp779 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C4B7M3 H0YN34 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPG11-007ENST000005595112127 bp567 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-019ENST00000558138750 bp250 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YLR8 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
SPG11-023ENST00000558988620 bp138 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YN96 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-010ENST00000559754411 bp107 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-021ENST00000557866468 bp156 aa (view)
 
Non stop decay
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-013ENST00000558155571 bp102 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YLK0 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-016ENST00000559822561 bp131 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-025ENST00000560858447 bp99 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YKY8 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-022ENST00000560435413 bp43 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YK24 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SPG11-014ENST00000558253879 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
SPG11-015ENST00000558790858 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
SPG11-027ENST00000559347716 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
SPG11-008ENST000005589891816 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-026ENST00000558080759 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-012ENST00000561391629 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-024ENST00000558561555 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-018ENST00000561268530 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-011ENST00000558093526 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-017ENST00000559933518 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SPG11-020ENST00000560299437 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 40 Coding exons: 40 Transcript length: 7,774 bps Translation length: 2,443 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10112

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JI7

Ensembl version

ENST00000261866.8

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays