Description

jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]

Synonyms

JADE-3, KIAA0215, PHF16

Location
About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 30 variations and maps to 9 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
JADE3-001ENST000006146284934823aaENSP00000481850
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14271A0A024R1A2 Q92613 NM_014735
NP_055550
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

JADE3-201ENST000006112504713823aaENSP00000479377
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14271A0A024R1A2 Q92613 NM_001077445
NP_001070913
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

JADE3-002ENST00000424392636186aaENSP00000391009
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F2Z3N8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE3-003ENST00000455411492114aaENSP00000400584
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F2Z2B6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 5 Transcript length: 636 bps Translation length: 186 residues

Transcript Support Level (TSL)

TSL:3

Ensembl version

ENST00000424392.4

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays