Transcript: ENST00000406230.5 CSF2RB-202

Description

colony stimulating factor 2 receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:2436]

Gene Synonyms

BETAGMR, CD131, IL3RB, IL5RB

Location

Chromosome 22: 36,922,134-36,938,611 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 31 domains and features, is associated with 8548 variant alleles and maps to 503 oligo probes.

Gene

This transcript is a product of gene ENSG00000100368.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000403662.8	CSF2RB-201	4853	897aa	ENSP00000384053.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13936	P32927-1	NM_000395.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000406230.5	CSF2RB-202	2895	903aa	ENSP00000385271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93160	P32927-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000421539.1	CSF2RB-203	969	228aa	ENSP00000393585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY07	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,895 bps, Translation length: 903 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P32927

CCDS

This transcript is a member of the Human CCDS set: CCDS93160

Transcript Support Level (TSL)

TSL:1

Version

ENST00000406230.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000406230.5 CSF2RB-202

Summary

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Transcript: ENST00000406230.5 CSF2RB-202

Summary

About Us

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